WebApr 8, 2024 · The Bioconductor Core Team's infrastructure comprises a complex, hybrid multi-cloud development, test, and publishing environment. This position is with the … WebNov 8, 2024 · In PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data Description Usage Format Source Description The data object contains the annotations of kinases and their conrresponding substrates as phosphorylation sites in human. It is extracted from the PhosphoSitePlus database.
PhosR enables processing and functional analysis of
WebBefore we can start interpreting biology from our phoshoproteomic data, the first step is to perform data preprocessing and QC. These include (but not limited to) assessing data quality, filtering, imputing missing values where appropriate, and … WebJun 10, 2024 · Bioconductor packages may need to be manually installed. While different version of the R software and associated packages may work correctly with PhosR, the authors use R version 4.0.3 and the following packages at the indicated versions at time of writing this protocol: PhosR (1.1.7) CRAN packages ruv (v0.9.7.1) e1071 (v1.7-6) das pons online
Bioconductor - PhosR
WebNov 8, 2024 · PhosR is a package for the comprenhensive analysis of phosphoproteomic data. There are two major components to PhosR: processing and downstream analysis. PhosR consists of various processing tools for phosphoproteomic data including filtering, imputation, normalisaton and batch correction, enabling integration of multiple … WebDec 8, 2024 · In a single run, PhosPiR provides data clean-up, fast data overview, multiple statistical testing, differential expression analysis, phosphosite annotation and translation across species, multilevel enrichment analyses, proteome-wide kinase activity and substrate mapping and network hub analysis. WebNon-biological experimental variation or "batch effects" are commonly observed across multiple batches of microarray experiments, often rendering the task of combining data … das prachtboot götz aly